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Bioinformatics of Genome Regulation and Structure II
Title
Bioinformatics of Genome Regulation and Structure II [electronic resource] / edited by Nikolay Kolchanov, Ralf Hofestaedt, Luciano Milanesi.
ISBN
9780387294551
Edition
1st ed. 2006.
Publication
New York, NY : Springer US : Imprint: Springer, 2006.
Physical Description
1 online resource (XIV, 560 p.)
Local Notes
Access is available to the Yale community.
Access and use
Access restricted by licensing agreement.
Summary
Bioinformatics of Genome Regulation and Structure presents selected papers from the Fourth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS), held in Novosibirsk, Russia, in July 2004. The conference was organized by the Laboratory of Theoretical Genetics, Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia. The material covers the most recent topics in bioinformatics, including (i) regulatory genomic sequences: databases, knowledge bases, computer analysis, modeling, and recognition; (ii) large-scale genome analysis and functional annotation; (iii) gene structure detection and prediction; (iv) comparative and evolutionary genomics; (v) computer analysis of genome polymorphism and evolution; computer analysis and modeling of transcription, splicing, and translation; structural computational biology: structure- function organization of genomic DNA, RNA, and proteins; (vi) gene networks, signal transduction pathways, and genetically controlled metabolic pathways: databases, knowledge bases, computer analysis, and modeling; principles of organization, operation, and evolution; (vii) data warehousing, knowledge discovery and data mining; and (viii) analysis of basic patterns of genome operation, organization, and evolution. Bioinformatics of Genome Regulation and Structure will be useful for scientists involved in basic and applied research in the field of experimental and theoretical studies of structure-function organization of genomes, university teachers and students, and mathematicians and biologists.
Variant and related titles
Springer ENIN.
Other formats
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Format
Books / Online
Language
English
Added to Catalog
June 24, 2019
Contents
Computational Structural, Functional and Evolutionary Genomics
Recognition of Coding Regions in Genome Alignment
Predicting sRNA Genes in the Genome of E. Coli by the Promoter-Search Algorithm PlatProm
Content Sensors Based on Codon Structure and DNA Methylation for Gene Finding in Vertebrate Genomes
The Sitega Tool for Recognition and Context Analysis of Transcription Factor Binding Sites: Significant Dinucleotide Features Besides the Canonical Consensus Exemplified By SF-1 Binding Site
Transcription Regulatory Regions Database (TRRD): A Source of Experimentally Confirmed Data on Transcription Regulatory Regions of Eukaryotic Genes
Artsite Database: Comparison of In Vitro Selected and Natural Binding Sites of Eukaryotic Transcription Factors
Comparative Analysis of Electrostatic Patterns for Promoter and Nonpromoter DNA in E. Coli Genome
Analysis of Nucleosome Formation Potential and Conformational Properties of Human J1-J2 and D2-D1 Type Alpha Satellite DNA
VMM: A Variable Memory Markov Model Prediction of Nucleosome Formation Sites
DNA Nucleosome Organization of the Promoter Gene Regions
A Toolbox for Analysis of RNA Secondary Structure Based on Genetic Algorithm
Comparative Genomics and Evolution of Bacterial Regulatory Systems
Comparative Whole Genome Sequence Analysis of Corynebacteria
New LTR Retrotransposable Elements from Eukaryotic Genomes
A Genome-Wide Identification of Mitochondrial DNA Topoisomerase I in Arabidopsis
Change in CpG Context is a Leading Cause of Correlation between the Rates of Non-Synonymous and Synonymous Substitutions in Rodents
Universal Seven-Cluster Structure of Genome Fragment Distribution: Basic Symmetry in Triplet Frequencies
New Methods to Infer DNA Function from Sequence Information
Revelation and Classification of Dinucleotide Periodicity of Bacterial Genomes Using the Method of Information Decomposition
Algorithms to Reconstruct Evolutionary Events at Molecular Level and Infer Species Phylogeny
Computational Structural and Functional Proteomics
Mining from Complete Proteomes to Identify Adhesins and Adhesin-Like Proteins: A Rapid Aid to Experimental Researchers
Central Moments Based Statistical Analysis for the Determination of Functional Sites in Proteins with Thematics
Amino Acids Surface Patterns in Protein Domain Functionality Analysis
Computer Simulations of Anionic Unsaturated Lipid Bilayer—A Suitable Model to Study Membrane Interactions with A Cell-Penetrating Peptide
The Role of Water in Homeodomain-DNA Interaction
Molecular Modeling of Human MT1 and MT2 Melatonin Receptors
Molecular Dynamics of Small Peptides Using Ergodic Trajectories
A Periodical Nature of 94 Protein Families
Prediction of Contact Numbers of Amino Acid Residues Using a Neural Network Model
Fastprot: A Computational Workbench for Recognition of the Structural and Functional Determinants in Protein Tertiary Structures
A Markov Model for Protein Sequences
Proteome Complexity Measures Based on Counting of Domain-to-Protein Links for Replicative and Non-Replicative Domains
Computational System Biology
A Software Architecture for Developmental Modeling in Plants: The Computable Plant Project
Prediction and Alignment of Metabolic Pathways
General Principles of Organization and Laws of Functioning in Governing Gene Networks
From Gradients to Stripes: A Logical Analysis of Drosophila Segmentation Genetic Network
Self-Oscillations in Hypothetical Gene Networks
Periodic Trajectories and Andronov-Hopf Bifurcations in Models of Gene Networks
On the Problem of Search for Stationary Points in Regulatory Circuits of Gene Networks
Modeling of Gene Expression by the Delay Equation
AGNS—A Database on Expression of Arabidopsis Genes
Study of the Interactions between Viral and Human Genomes During Transformation of B Cells with Epstein-Barr Virus
Probing Gene Expression: Sequence-Specific Hybridization on Microarrays
Determination of the Developmental Age of a Drosophila Embryo from Confocal Images of its Segmentation Gene Expression Patterns
Biomolecular Data and Processes Analysis
Topical Clustering of Biomedical Abstracts by Self-Organizing Maps
Software for Analysis of Gene Regulatory Sequences by Knowledge Discovery Methods
A Mathematical Model of the Discontinuous Genetic Structures Fixation Process.
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