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BLAST

Author
Title
BLAST / Ian Korf, Mark Yandell, and Joseph Bedell ; [foreword by Stephen Altschul].
ISBN
9781449358112
144935811X
9780596002992
0596002998
Edition
1st ed.
Publication
Sebastopol, CA : O'Reilly & Associates, 2003.
Physical Description
1 online resource (xviii, 339 pages) : illustrations
Local Notes
Access is available to the Yale community.
Notes
"An essential guide to the Basic Local Alignment Search Tool"--Cover.
Access and use
Access restricted by licensing agreement.
Summary
Sequence similarity is a powerful tool for discovering biological function. Just as the ancient Greeks used comparative anatomy to understand the human body and linguists used the Rosetta stone to decipher Egyptian hieroglyphs, today we can use comparative sequence analysis to understand genomes. BLAST (Basic Local Alignment Search Tool), is a sophisticated software package for rapid searching of nucleotide and protein databases. It is one of the most important software packages used in sequence analysis and bioinformatics. Most users of BLAST, however, seldom move beyond the program's defaul.
Variant and related titles
Basic Local Alignment Search Tool
O'Reilly Safari. OCLC KB.
Other formats
Print version: Korf, Ian. BLAST. 1st ed. Sebastopol, CA : O'Reilly & Associates, 2003
Format
Books / Online
Language
English
Added to Catalog
January 09, 2020
Bibliography
Includes bibliographical references and index.
Contents
pt. I. Introduction
1. Hello BLAST
pt. II. Theory
2. Biological Sequences
3. Sequence Alignment
4. Sequence Similarity
pt. III. Practice
5. BLAST
6. Anatomy of a BLAST Report
7. A BLAST Statistics Tutorial
8. 20 Tips to Improve Your BLAST Searches
9. BLAST Protocols
pt. IV. Industrial-Strength BLAST
10. Installation and Command-Line Tutorial
11. BLAST Databases
12. Hardware and Software Optimizations
pt. V. BLAST Reference
13. NCBI-BLAST Reference
14. WU-BLAST Reference
pt. VI. Appendixes
A. NCBI Display Formats
B. Nucleotide Scoring Schemes
C. NCBI-BLAST Scoring Schemes
D. blast-imager.pl
E. blast2table.pl.
Subjects (Medical)
Software.
Medicine.
Genre/Form
Databases.
Also listed under
Yandell, Mark.
Bedell, Joseph.
Safari Books Online (Firm)
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