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Variation, variability, batches and bias in microarray experiments : an introduction / Andreas Scherer

Microarray platforms and aspects of experimental variation / John A. Coller, Jr.

Experimental design / Peter Grass

Batches and blocks, sample pools and subsamples in the design and analysis of gene expression studies / Naomi Altman

Aspects of technical bias / Martin Schumacher ... [et al.]

Bioinformatic strategies for cDNA-microarray data processing / Jessica Fahlén ... [et al.]

Batch effect estimation of microarray platforms with analysis of variance / Nysia I. George and James J. Chen

Variance due to smooth bias in rat liver and kidney baseline gene expression in a large multi-laboratory data set / Michael J. Boedigheimer ... [et al.]

Microarray gene expression : the effects of varying certain measurement conditions / Walter Liggett ... [et al.]

Adjusting batch effects in microarray experiments with small sample size using empirical Bayes methods / W. Evan Johnson and Cheng Li

Identical reference samples and empirical Bayes method for cross-batch gene expression analysis / Wynn L. Walker and Frank R. Sharp

Principal variance components analysis : estimating batch effects in microarray gene expression data / Jianying Li ... [et al.]

Batch profile estimation, correction, and scoring / Tzu-Ming Chu ... [et al.]

Visualization of cross-platform microarray normalization / Xuxin Liu ... [et al.]

Toward integration of biological noise : aggregation effect in microarray data analysis / Lev Klebanov and Andreas Scherer

Potential sources of spurious associations and batch effects in genome-wide association studies / Huixiao Hong ... [et al.]

Standard operating procedures in clinical gene expression biomarker panel development / Khurram Shahzad ... [et al.]

Data, analysis, and standardization / Gabriella Rustici, Andreas Scherer, and John Quackenbush.

Oligonucleotide Array Sequence Analysis - methods.

Gene Expression Profiling.

Reproducibility of Results.