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Microbial metagenomics, metatranscriptomics, and metaproteomics
Title
Microbial metagenomics, metatranscriptomics, and metaproteomics / edited by Edward F. DeLong, Morton and Claire Goulder Family, Professor in Environmental Systems, Massachusetts Institute of Technology, Dept. of Civil and Environmental Engineering, Dept. of Biological Engineering, Cambridge, MA, USA and Center for Microbial Ecology, Research and Education, University of Hawaii, Manoa Honolulu, HI.
ISBN
9780124079274
012407927X
9780124078635
012407863X
Edition
First edition.
Publication
Amsterdam ; Boston : Elsevier/Academic Press, 2013.
Physical Description
1 online resource (lix, 598 pages, 24 unnumbered pages of plates) : illustrations (some color).
Local Notes
Access is available to the Yale community.
Access and use
Access restricted by licensing agreement.
Summary
This new volume of Methods in Enzymology continues the legacy of this premier serial with quality chapters authored by leaders in the field. This volume covers microbial metagenomics, metatranscriptomics, and metaproteomics, and includes chapters on such topics as in-solution FISH for single cell genome preparation, preparation of BAC libraries from marine microbial community DNA, and preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton. Continues the legacy of this premier serial with quality chapters authored by leaders in the field.
Variant and related titles
Elsevier ScienceDirect All Books. OCLC KB.
Other formats
Print version: Microbial metagenomics, metatranscriptomics, and metaproteomics. First edition. Amsterdam ; Boston : Elsevier/Academic Press, 2013
Format
Books / Online
Language
English
Added to Catalog
September 08, 2020
Series
Methods in enzymology, volume 531
Bibliography
Includes bibliographical references and indexes.
Contents
In-solution fluorescence in situ hybridization and fluorescence-activated cell sorting for single cell and population genome recovery / Mohamed F. Haroon, Connor T. Skennerton, Jason A. Steen, Nancy Lachner, Philip Hugenholtz, and Gene W. Tyson
Whole cell immunomagnetic enrichment of environmental microbial consortia using rRNA-targeted magneto-FISH / Elizabeth Trembath-Reichert, Abigail Green-Saxena, and Victoria J. Orphan
Coupling FACS and genomic methods for the characterization of uncultivated symbionts / Anne Thompson, Shellie Bench, Brandon Carter, and Jonathan Zehr
Optofluidic cell selection from complex microbial communities for single-genome analysis / Zachary C. Landry, Stephen J. Giovanonni, Stephen R. Quake, and Paul C. Blainey
Quantifying and identifying the active and damaged subsets of indigenous microbial communities / Corinne Ferrier Maurice and Peter James Turnbaugh
Preparation of BAC libraries from marine microbial populations / Gazalah Sabehi and Oded Béjà
Preparation of fosmid libraries and functional metagenomic analysis of microbial community DNA / Asunción Martínez and Marcia S. Osburne
Preparation of metagenomic libraries from naturally occurring marine viruses / Sergei A. Solonenko and Matthew B. Sullivan
Preparation and metatranscriptomic analyses of host-microbe systems / Jarrad T. Hampton-Marcell, Stephanie M. Moormann, Sarah M. Owens, and Jack A. Gilbert
Preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton / Frank J. Stewart
Sequential isolation of metabolites, RNA, DNA, and proteins from the same unique sample / Hugo Roume, Anna Heintz-Buschart, Emilie EL Muller, and Paul Wilmes
Use of internal standards for quantitative metranscriptome and metagenome analysis / Brandon M. Satinsky, Scott M. Gilford, Byron C. Crump, and Mary Ann Moran
Sample processing and cDNA preparation for microbial metatranscriptomics in complex soil communities / Lilia C. Carvalhais and Peer M. Schenk
Sample preparation and processing for planktonic microbial community proteomics / Robert M. Morris and Brook L. Nunn
Sample handling and mass spectrometry for microbial metaproteomic analyses / Ryan S. Mueller and Chongle Pan
Molecular tools for investigating mcirobial community structure and function in oxygen-deficient marine waters / Alyse K. Hawley, Sam Kheirandish, Andreas Mueller, Hilary T.C. Leung, Angela D. Norbeck, Heather M. Brewer, Ljiljana Pasa-Tolic, and Steven J. Hallam
Assembling full-length rRNA genes from short-read metagenomic sequence datasets using EMIRGE / Christopher S. Miller
Computational methods for high-throughput comparative analyses of natural microbial communities / Sarah P. Preheim, Allison R. Perrotta, Jonathan Friedman, Chris Smilie, Ilana Brito, Mark B. Smith, and Eric Alm
Advancing our understanding of the human microbiome using QIIME / José A. Navas-Molina, Juan M. Peralta-Sánchez, Antonio González, Paul J. McMurdie, Yoshiki Vázquez-Baeza, Zhenjiang Xu, Luke K. Ursell, Christian Lauber, Hongwei Zhou, Se Jin Song, James Huntley, Gail L. Ackermann, Donna Berg-Lyons, Susan Holmes, J. Gregory Caporaso, and Rob Knight
Disentangling associated genomes / Daniel B. Sloan, Gordon M. Bennett, Philipp Engel, David Williams, and Howard Ochman
Microbial community analysis using MEGAN / Daniel H. Huson and Nico Weber
A metagenomics portal for a democratized sequencing world / Andreas Wilke, Elizabeth M. Glass, Daniela Bartels, Jared Bischof, Daniel Braithwaite, Mark D'Souza, Wolfgang Gerlach, Travis Harrison, Kevin Keegan, Hunter Matthews, Renzo Kottmann, Tobias Paczian, Wei Tang, William L. Trimble, Pelin Yilmaz, Jared Wilkening, Narayan Desai, and Folker Meyer
A user's guide to quantitative and comparative analysis of metagenomic datasets / Chengwei Luo, Luis M. Rodriguez-R, and Konstantinos T. Konstantinidis.
Subjects
Subjects (Medical)
Metagenomics - methods.
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